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Biology 5316 - Advanced Biological Concepts

schedule


Biology 5316 - Advanced Biological Concepts
Syllabus, Fall 2004

Dr. Jon A. Baskin

Office: Nierman 106 -- Telephone: 361 593-3580 -- e-mail: kfjab02
 Baskin's home page:  http:/users.tamuk.edu/kfjab02/

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  Office Hours: 11-12  MWF; 9:30-12 TTh; or by appointment. University duties, such as committee meetings, may prevent me from being in my office.  If you have any questions or concerns, please talk to me before or after class or phone me at the office for an appointment.


BIOLOGY 5316   Advanced Biological Concepts 3(3-0)

Course Description: A study of traditional biological phenomena using modern research techniques. Cell, organismal, and population biology will be analyzed with an emphasis on molecular and evolutionary concepts. Prerequisite: graduate standing in Biology

Objectives: This course offers a broad overview of key concepts of modern biology that all graduate students should know, with an emphasis on critical thinking and the evaluation of current biological research. Subjects covered will provide a survey of additional specialized biological concepts such as evolution and population genetics, cell signaling, and the scientific process.

Required Text

Krane D. E. and Raymer M. L. (2003) Fundamental Concepts of Bioinformatics. Benjamin Cummings.

 

Supplemental lecture material

An introductory textbook for biology majors will be useful. Two of the better texts are

Grading: Your grade will be determined in the following manner: 


Please keep all of your tests and assignments, in case there is a question concerning your grade in the course. Grades will be awarded according to the regulations on page 60 of the 2002-2004 catalog. The last day to drop the course with an automatic grade of Q is March 31. After March 31, you must talk to me before dropping the course. The last day to drop the course with a Q if you have a passing grade is April 28. It is up to you to take care of all the necessary paperwork. If you do not have access to the web for students and want to learn from me your grade in the course leave me a stamped self-addressed envelope during finals week.

Lecture Exams: The five examinations will cover notes given in class and pertinent information from the textbook. Some notes will come from sources other than the text. The examinations will consist mainly of short answer questions, definitions, characterizations, and explanations of text figures. 

Web Sites of Interest

Tentative Schedule

Week of

Topic

August 23

  Introduction to Bioinformatics, Evolution

30

  Central Dogma

Sept 7

  Control of Genomes

14

DNA Searches and Pairwise Alignments; Exam 1

21

Substitution Patterns

28

Distance Based Methods of Phylogenetics

Oct 4

Character Based Methods of Phylogenetics

11

Character Based Methods of Phylogenetics; Exam 2

18

Genomics

25

Genomics

Nov 2

Proteonomics

9

Proteonomics; Exam 3

16

Student Presentations

23

Student Presentations

30

Student Presentations

December

:00 Exam 4 

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